Pass-Through Taxation of Income, Losses, Deductions, and Credits

For owners of S corporations (and LLCs electing S status), federal tax “pass-through” treatment means the entity generally is not subject to regular corporate income tax; instead, its items of income, loss, deduction, and credit flow to shareholders, who report them on their returns.

As a baseline, an S corporation is exempt from most Chapter 1 taxes while computing taxable income similarly to an individual and separately stating certain items to shareholders. The entity files Form 1120-S and issues Schedule K-1s reflecting each shareholder’s allocable items. 2024 Instructions for Form 1120‑S

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Tax Calculations for S-Corps

How pass-through items are allocated to shareholders

Shareholder stock and debt basis: adjustments and ordering

  • Shareholder basis is the foundation for deductibility of passed‑through losses and for tax treatment of distributions. Basis is adjusted annually: increases include pass‑through income and certain tax‑exempt income; decreases include non‑deductible expenses, passed‑through losses (but not below zero), and non‑dividend distributions. Instructions for Form 7203

  • Ordering for tax years beginning on or after August 18, 1998 generally follows: increase for income; decrease for distributions; decrease for non‑deductible expenses; then decrease for losses/deductions. An elective alternative allows losses to reduce basis before non‑deductible items by attaching a statement per the regulations. Instructions for Form 7203

  • Adjustments are generally measured at year‑end; if stock is disposed mid‑year, adjustments occur immediately prior to the disposition. Instructions for Form 7203

  • Debt basis exists only for bona fide shareholder loans to the corporation; guarantees do not create basis until payment is made. Loan basis is reduced when losses exceed stock basis and later restored with net increases before increasing stock basis. Instructions for Form 7203

Cash and property distributions: AAA, E&P, and taxability

Property distributions and bargain sales to shareholders

  • Distributing appreciated property triggers corporate‑level gain as if sold at fair market value; losses are generally disallowed, and gains/losses cannot be netted across multiple property distributions. A bargain sale to a related party is treated as part‑sale (gain recognition to FMV) and part‑distribution (the below‑FMV element), impacting AAA and potentially dividend treatment if E&P exists. LB&I Transaction Unit—Property Distribution

Shareholder-level limitations on losses and credits

Reasonable compensation vs. distributions

  • Officer‑shareholders who provide services must receive reasonable wages (subject to payroll taxes); distributions are not a substitute for compensation. The IRS instructs that payments for services be treated as wages to the extent they represent reasonable compensation and provides guidance in the 1120‑S instructions. 2024 Instructions for Form 1120‑S

Built‑in gains tax and passive investment income tax at the entity level

  • Despite pass‑through treatment, S corporations can face entity‑level taxes. Built‑in gains (BIG) tax applies when a C corporation converts to S status (or an S corporation acquires assets with carryover basis from a C corporation) and recognizes built‑in gains during the recognition period; the tax is at the highest corporate rate, limited by net unrealized built‑in gain and taxable income rules. 26 CFR § 1.1374‑10

  • Passive investment income tax applies if the S corporation has accumulated E&P and passive investment income exceeds 25% of gross receipts; excess net passive income is taxed at corporate rates. 2024 Instructions for Form 1120‑S

Qualified Business Income (QBI) deduction (§ 199A)

  • Many S corporation shareholders may be eligible for a QBI deduction up to 20% of qualified business income (subject to thresholds, wage/property limits, and SSTB rules). The deduction is claimed by the shareholder and computed using Forms 8995/8995‑A and related instructions. 2024 Instructions for Form 8995; 2024 Instructions for Form 8995‑A

Reporting and compliance: key filings and deadlines

Special elections and allocation mechanics

  • Year termination elections: if a shareholder disposes of a substantial amount of stock (qualifying disposition), the corporation may elect to split the year into two short years to allocate items, adjust AAA/E&P/basis, and compute distribution effects more fairly. 2024 Instructions for Form 1120‑S

  • Shareholder termination elections: affected shareholders and the corporation may elect to treat the year as two short years for per‑share, per‑day allocation when a shareholder’s interest terminates. 2024 Shareholder’s Instructions for Schedule K‑1 (Form 1120‑S)

LLCs taxed as S corporations (classification)

  • A domestic LLC can elect to be treated as a corporation (and then as an S corporation if eligible) by filing the appropriate classification and S election forms; otherwise, default classification rules apply. 2024 Instructions for Form 1120‑S

Practical takeaways for S corporation owners

References

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Scorpio Tax Management can assist High Income Earners and Business Owners in all 50 states

Please write us at Tax@S-CorpTax.com, or call (858) 779-4125. You can also schedule a call in advance HERE.

California

We assist business owners in all the following California cities and their surrounding areas:

  • San Francisco, including Marin County (Sausalito, Mill Valley, Tiburon), Silicon Valley (Palo Alto, Menlo Park, Mountain View), and the entire East Bay (Oakland, Berkeley, Fremont).

  • Paso Robles, including Atascadero, San Luis Obispo, Morro Bay, and all other parts of the Central Coast.

  • Santa Barbara, including Buellton, Santa Ynez, Montecito, Ventura, Oxnard, and Carpinteria.

  • Los Angeles, including Malibu, Santa Monica, Beverly Hills, Hollywood, South Bay (Manhattan Beach, Redondo Beach), and Pasadena.

  • Orange County, including Anaheim, Huntington Beach, Newport Beach, Irvine, Laguna Beach, and Costa Mesa.

  • San Diego, including Del Mar, La Jolla, Rancho Santa Fe, Encinitas, Oceanside, and Carlsbad.

  • Palm Springs, including Palm Desert, Rancho Mirage, Indio, La Quinta, and all other parts of the Coachella Valley.

Florida

We serve business owners across Florida’s vibrant cities and regions, from bustling urban centers to coastal communities:

  • Miami, including Miami Beach, Coral Gables, Coconut Grove, Key Biscayne, and the greater Miami-Dade County area.

  • Fort Lauderdale, including Hollywood, Pompano Beach, Weston, Davie, and all of Broward County.

  • West Palm Beach, including Boca Raton, Delray Beach, Jupiter, Palm Beach Gardens, and the entire Palm Beach County area.

  • Tampa, including St. Petersburg, Clearwater, Sarasota, Bradenton, and the broader Tampa Bay region.

  • Orlando, including Winter Park, Kissimmee, Lake Buena Vista, Celebration, and the greater Central Florida area.

  • Jacksonville, including St. Augustine, Ponte Vedra Beach, Amelia Island, and all of Duval and St. Johns Counties.

  • Naples, including Marco Island, Bonita Springs, Estero, and the entire Collier County and Southwest Florida region.

Nevada

Our tax services extend to Nevada’s key business hubs and surrounding communities, supporting entrepreneurs in a tax-friendly state:

  • Las Vegas, including Henderson, Summerlin, North Las Vegas, Boulder City, and the entire Clark County area.

  • Reno, including Sparks, Carson City, Truckee, and the broader Washoe County and Northern Nevada region.

  • Lake Tahoe (Nevada side), including Incline Village, Stateline, Zephyr Cove, and the surrounding South Lake Tahoe area.

  • Henderson, including Green Valley, Anthem, Seven Hills, and nearby communities in the Las Vegas Valley.

  • Elko, including Spring Creek, Carlin, and the greater Northeastern Nevada region.

  • Mesquite, including St. George (nearby Utah border), Bunkerville, and the Virgin Valley area.

  • Pahrump, including Nye County and surrounding rural communities west of Las Vegas.

Tennessee

We support business owners in Tennessee’s dynamic cities and regions, from music hubs to growing entrepreneurial centers:

  • Nashville, including Franklin, Brentwood, Hendersonville, Murfreesboro, and the greater Davidson and Williamson County areas.

  • Memphis, including Germantown, Collierville, Cordova, Bartlett, and the broader Shelby County region.

  • Knoxville, including Farragut, Maryville, Oak Ridge, Sevierville, and the entire East Tennessee area.

  • Chattanooga, including Lookout Mountain, Signal Mountain, Hixson, and the surrounding Hamilton County and Southeast Tennessee region.

  • Clarksville, including Hopkinsville (nearby Kentucky border), Springfield, and the greater Montgomery County area.

  • Johnson City, including Kingsport, Bristol, Elizabethton, and the Tri-Cities region of Northeast Tennessee.

  • Gatlinburg, including Pigeon Forge, Sevierville, and the Smoky Mountains area, catering to tourism-driven businesses.

We are not limited to the above states… Reach out to us! Our contact info is below.